Nucleic acids research

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  Año 2022, Vol. 50, Número 10

  • AcademicSubjects/SCI00010

    • CT-FOCS: a novel method for inferring cell type-specific enhancer–promoter maps

      Tom Aharon Hait, Ran Elkon, Ron Shamir

      • Resumen
      • Texto completo

      págs. 55-55

      

    • Depth normalization of small RNA sequencing: using data and biology to select a suitable method

      Yannick Düren, Johannes Lederer, Li-Xuan Qin

      • Resumen
      • Texto completo

      págs. 56-56

      

    • CellDART: cell type inference by domain adaptation of single-cell and spatial transcriptomic data

      Sungwoo Bae, Kwon Joong Na, Jaemoon Koh, Dong Soo Lee, Hongyoon Choi, Young Tae Kim

      • Resumen
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      págs. 57-57

      

    • Inducible directed evolution of complex phenotypes in bacteria

      Ibrahim S Al’Abri, Daniel J Haller, Zidan Li, Nathan Crook

      • Resumen
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      págs. 58-58

      

    • Antispacer peptide nucleic acids for sequence-specific CRISPR-Cas9 modulation

      Nicholas G Economos, Elias Quijano, Kelly E W Carufe, J Dinithi R Perera, Peter M Glazer

      • Resumen
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      págs. 59-59

      

    • Rapid and accurate identification of ribosomal RNA sequences via deep learning

      Zhi-Luo Deng, Philipp C Münch, René Mreches, Alice C. McHardy

      • Resumen
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      págs. 60-60

      

    • Impact of guanidine-containing backbone linkages on stereopure antisense oligonucleotides in the CNS

      Pachamuthu Kandasamy, Yuanjing Liu, Vincent Aduda, Sandheep Akare, Rowshon Alam, Amy Andreucci, David Boulay, Keith Bowman, Michael Byrne, Megan Cannon, Onanong Chivatakarn, Juili Dilip Shelke, Naoki Iwamoto, Tomomi Kawamoto, Jayakanthan Kumarasamy, Sarah Lamore, Muriel Lemaitre, Xuena Lin, Kenneth A. Longo, Richard Looby, Subramanian Marappan, Jake Metterville, Susovan Mohapatra, Bridget Newman, Ik-Hyeon Paik, Saurabh Patil, Erin Purcell-Estabrook, Mamoru Shimizu, Pochi Shum, Stephany Standley, Kris Taborn, Snehlata Tripathi, Hailin Yang, Yuan Yin, Xiansi Zhao, Elena Dale, Chandra Vargeese

      • Resumen
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      págs. 5401-5423

      

    • The metaphorical swiss army knife: The multitude and diverse roles of HEAT domains in eukaryotic translation initiation

      Daniel Friedrich, Assen Marintchev, Haribabu Arthanari

      • Resumen
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      págs. 5424-5442

      

    • Control of backbone chemistry and chirality boost oligonucleotide splice switching activity

      Pachamuthu Kandasamy, Graham McClorey, Mamoru Shimizu, Nayantara Kothari, Rowshon Alam, Naoki Iwamoto, Jayakanthan Kumarasamy, Gopal R Bommineni, Adam Bezigian, Onanong Chivatakarn, David C D Butler, Michael Byrne, Katarzyna Chwalenia, Kay E. Davies, Jigar Desai, Juili Dilip Shelke, Ann F Durbin, Ruth Ellerington, Ben Edwards, Jack Godfrey, Andrew Hoss, Fangjun Liu, Kenneth A. Longo, Genliang Lu, Subramanian Marappan, Jacopo Oieni, Ik-Hyeon Paik, Erin Purcell-Estabrook, Chikdu S. Shivalila, Maeve Tischbein, Tomomi Kawamoto, Carlo Rinaldi, Joana Rajão-Saraiva, Snehlata Tripathi, Hailin Yang, Yuan Yin, Xiansi Zhao, Cong Zhou, Jason Zhang, Luciano Apponi, Matthew J A Wood, Chandra Vargeese

      • Resumen
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      págs. 5443-5466

      

    • Enzymatic Synthesis of Chemical Nuclease Triplex-Forming Oligonucleotides with Gene-Silencing Applications

      Bríonna McGorman, Nicolò Zuin Fantoni, Sinéad O’Carroll, Anna Ziemele, Afaf H El-Sagheer, Tom Brown, Andrew Kellett

      • Resumen
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      págs. 5467-5481

      

    • Disentangling single-cell omics representation with a power spectral density-based feature extraction

      Seid Miad Zandavi, Forrest C Koch, Abhishek Vijayan, Fabio Zanini, Fatima Valdes Mora, David Gallego Ortega, Fatemeh Vafaee

      • Resumen
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      págs. 5482-5492

      

    • Exonic splicing code and protein binding sites for calcium

      Reuben J Pengelly, Dara Bakhtiar, Ivana Borovská, Jana Královičová, Igor Vorechovsky

      • Resumen
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      págs. 5493-5512

      

    • Missplicing suppressor alleles of Arabidopsis PRE-MRNA PROCESSING FACTOR 8 increase splicing fidelity by reducing the use of novel splice sites

      Adrián Cabezas-Fuster, Rosa Micol Ponce, Sara Fontcuberta-Cervera, María Rosa Ponce Molet

      • Resumen
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      págs. 5513-5527

      

    • Hormone-controlled cooperative binding of transcription factors drives synergistic induction of fasting-regulated genes

      Dana Goldberg, Meital Charni-Natan, Nufar Buchshtab, Meirav Bar-Shimon, Ido Goldstein

      • Resumen
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      págs. 5528-5544

      

    • Hexokinase 2 is a transcriptional target and a positive modulator of AHR signalling

      Manon Watzky, Solène Huard, Ludmila Juricek, Julien Dairou, Caroline Chauvet, Xavier Coumoul, Anne Letessier, Benoit Miotto

      • Resumen
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      págs. 5545-5564

      

    • Ccr4–Not complex reduces transcription efficiency in heterochromatin

      Pablo Monteagudo-Mesas, Cornelia Brönner, Parastou Kohvaei, Haris Amedi, Stefan Canzar, Mario Halic

      • Resumen
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      págs. 5565-5576

      

    • Catchet-MS identifies IKZF1-targeting thalidomide analogues as novel HIV-1 latency reversal agents

      Enrico Ne, Raquel Crespo, Ray Izquierdo-Lara, Shringar Rao, Selin Koçer, Alicja Górska, Thomas van Staveren, Tsung Wai Kan, David van de Vijver, Dick Dekkers, Casper Rokx, Panagiotis Moulos, Pantelis Hatzis, Robert-jan Palstra, Jeroen Demmers, Tokameh Mahmoudi

      • Resumen
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      págs. 5577-5598

      

    • USP16-mediated histone H2A lysine-119 deubiquitination during oocyte maturation is a prerequisite for zygotic genome activation

      Yan Rong, Ye-Zhang Zhu, Jia-li Yu, Yun-Wen Wu, Shu-Yan Ji, Yong Zhou, Yu Jiang, Jin Jin, Heng-Yu Fan, Li Shen, Qian-Qian Sha

      • Resumen
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      págs. 5599-5616

      

    • Chromosomal synapsis defects can trigger oocyte apoptosis without elevating numbers of persistent DNA breaks above wild-type levels

      Ramya Ravindranathan, Kavya Raveendran, Frantzeskos Papanikos, Pedro A San-Segundo, Attila Toth

      • Resumen
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      págs. 5617-5634

      

    • DNA-PKcs-dependent phosphorylation of RECQL4 promotes NHEJ by stabilizing the NHEJ machinery at DNA double-strand breaks

      Huiming Lu, Junhong Guan, Shih-Ya Wang, Guo-Min Li, Vilhelm A Bohr, Anthony J Davis

      • Resumen
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      págs. 5635-5651

      

    • The topoisomerase 3 zinc finger domain cooperates with the RMI1 scaffold to promote stable association of the BTR complex to recombination intermediates in the Caenorhabditis elegans germline

      Maria Rosaria Dello Stritto, Nina Vojtassakova, Maria Velkova, Patricia Hamminger, Patricia Ulm, Verena Jantsch

      • Resumen
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      págs. 5652-5671

      

    • RNF4 controls the extent of replication fork reversal to preserve genome stability

      Linli Ding, Yi Luo, Tian Tian, Xu Chen, Yulan Yang, Min Bu, Jinhua Han, Bing Yang, Haiyan Yan, Ting Liu, Mengjie Wu, Guofei Zhang, Yipeng Xu, Shaoxing Zhu, Michael S Y Huen, Genxiang Mao, Jun Huang

      • Resumen
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      págs. 5672-5687

      

    • Mechanism of transcription modulation by the transcription-repair coupling factor

      Bishnu P Paudel, Zhi-Qiang Xu, Slobodan Jergic, Aaron J Oakley, Nischal Sharma, Simon H J Brown, James C Bouwer, Peter J. Lewis, Nicholas E. Dixon, Antoine M van Oijen, Harshad Ghodke

      • Resumen
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      págs. 5688-5712

      

    • The C-terminal LCAR of host ANP32 proteins interacts with the influenza A virus nucleoprotein to promote the replication of the viral RNA genome

      Fangzheng Wang, Carol M Sheppard, Bhakti Mistry, Ecco Staller, Wendy S Barclay, Jonathan M Grimes, Ervin Fodor, Haitian Fan

      • Resumen
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      págs. 5713-5725

      

    • Twisting DNA by salt

      Sergio Cruz-León, Willem Vanderlinden, Peter Müller, Tobias Forster, Georgina Staudt, Yi-Yun Lin, Jan Lipfert, Nadine Schwierz

      • Resumen
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      págs. 5726-5738

      

    • Mutations compensating for the fitness cost of rifampicin resistance in Escherichia coli exert pleiotropic effect on RNA polymerase catalysis

      Natalia Kurepina, Maxim Chudaev, Barry N. Kreiswirth, Vadim Nikiforov, Arkady Mustaev

      • Resumen
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      págs. 5739-5756

      

    • Identification and characterization of a prokaryotic 6-4 photolyase from Synechococcus elongatus with a deazariboflavin antenna chromophore

      Simeng Chen, Chenxi Liu, Chenchen Zhou, Zhihui Wei, Yuting Li, Lei Xiong, Liang Yan, Jun Lv, Liang Shen, Lei Xu

      • Resumen
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      págs. 5757-5771

      

    • Intra-axonal translation of Khsrp mRNA slows axon regeneration by destabilizing localized mRNAs

      Priyanka L. Patel, Courtney N Buchanan, Matthew D Zdradzinski, Pabitra K Sahoo, Amar N Kar, Seungjoon Lee, Lauren S Vaughn, Anatoly Urisman, Juan Oses-Prieto, Michela Dell’Orco, Devon E Cassidy, Irene Dalla Costa, Sharmina Miller, Elizabeth Thames, Terika P Smith, Alma L Burlingame, Nora Perrone-Bizzozero, Jeffery L Twiss

      • Resumen
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      págs. 5772-5792

      

    • Synthesis of RNA-cofactor conjugates and structural exploration of RNA recognition by an m6A RNA methyltransferase

      Vincent Meynier, Laura Iannazzo, Marjorie Catala, Stephanie Oerum, Emmanuelle Braud, Colette Atdjian, Pierre Barraud, Matthieu Fonvielle, Carine Tisné, Mélanie Ethève-Quelquejeu

      • Resumen
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      págs. 5793-5806

      

    • GNAT toxins evolve toward narrow tRNA target specificities

      Dmitry Bikmetov, Alexander M J Hall, Alexei Livenskyi, Bridget Gollan, Stepan Ovchinnikov, Konstantin Gilep, Jenny Y Kim, Gerald Larrouy-Maumus, Viktor Zgoda, Sergei Borukhov, Konstantin Severinov, Sophie Helaine, Svetlana Dubiley

      • Resumen
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      págs. 5807-5817