Nucleic acids research

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  Año 2004, Número 17

  • In silico identification of transcriptional regulators associated with c-Myc

    K. I. Zeller, R. Elkon

    págs. 4955-4961

    

  • DNA computing using single-molecule hybridization detection

    G. Rozenberg, C. V. Henkel, H. P. Spaink, K. A. Schmidt

    págs. 4962-4968

    

  • Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

    M. Touchon, A. Arneodo, Y. d'Aubenton-Carafa

    págs. 4969-4978

    

  • Bipartite pattern discovery by entropy minimization-based multiple local alignment

    P. K. Rogan, C. Bi

    págs. 4979-4991

    

  • DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains

    C. Guarnaccia

    págs. 4992-5002

    

  • The post-replication repair RAD18 and RAD6 genes are involved in the prevention of spontaneous mutations caused by 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiae

    M. de Padula

    págs. 5003-5010

    

  • Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis

    K. E. Richmond

    págs. 5011-5018

    

  • Lsh, an epigenetic guardian of repetitive elements

    J. Huang

    págs. 5019-5028

    

  • Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved

    V. N. Babenko, D. M. Krylov

    págs. 5029-5035

    

  • Solving the riddle of codon usage preferences: a test for translational selection

    M. d. Reis

    págs. 5036-5044

    

  • Selection and evolution of NTP-specific aptamers

    D. Louis, B. Sargueil, L. Weill

    págs. 5045-5058

    

  • HYPROSP: a hybrid protein secondary structure prediction algorithm-a knowledge-based approach

    H. N. Lin, J. M. Chang, K. P. Wu

    págs. 5059-5065

    

  • Pdr3 is required for DNA damage induction of MAG1 and DDI1 via a bi-directional promoter element

    Y. Zhu, W. Xiao

    págs. 5066-5075

    

  • A yeast arginine specific tRNA is a remnant aspartate acceptor

    R. Geslain, A. Fender

    págs. 5076-5086

    

  • DNA adopts normal B-form upon incorporation of highly fluorescent DNA base analogue tC: NMR structure and UV-Vis spectroscopy characterization

    K. C. Engman

    págs. 5087-5095

    

  • Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

    T. Sakurai, K. Iida, M. Seki

    págs. 5096-5103

    

  • DNA polymerase b overexpression stimulates the Rad51-dependent homologous recombination in mammalian cells

    Y. Canitrot, J. P. Capp

    págs. 5104-5112

    

  • Method for direct discrimination of intra- and intermolecular hydrogen bonds, and characterization of the G(:A):G(:A):G(:A):G heptad, with scalar couplings across hydrogen bonds

    A. Matsugami, H. Sotoya

    págs. 5113-5118

    

  • A general role of the DNA glycosylase Nth1 in the abasic sites cleavage step of base excision repair in Schizosaccharomyces pombe

    I. Alseth, H. Korvald

    págs. 5119-5125

    

  • Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes

    A. Weixlbaumer

    págs. 5126-5133

    

  • Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta

    N. G. Beloglazova

    págs. 5134-5146

    

  • A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

    Y. Chen, T. Kortemme, T. Robertson

    págs. 5147-5162

    

  • Position- and orientation-specific enhancement of topoisomerase I cleavage complexes by triplex DNA structures

    S. Antony, P. B. Arimondo

    págs. 5163-5173

    

  • AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria

    J. M. Grienenberger, R. Perrin, H. Lange

    págs. 5174-5182

    

  • Adjust quality scores from alignment and improve sequencing accuracy

    M. Nordborg, M. Li

    págs. 5183-5191

    

  • DNA-binding domain of GCN4 induces bending of both the ATF/CREB and AP-1 binding sites of DNA

    A. I. Dragan

    págs. 5192-5197

    

  • A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli

    E. I. Gonzalez de Valdivia

    págs. 5198-5205

    

  • The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MATa cells and exerts a potential tRNA position effect in MATa cells

    E. C. Miller, N. P. Buisson, N. Jambunathan, T. A. Simms

    págs. 5206-5213

    

  • Biochemical properties of Trypanosoma cruzi telomerase

    D. P. Munoz, K. Collins

    págs. 5214-5222

    

  • The DNA primase of Sulfolobus solfataricus is activated by substrates containing a thymine-rich bubble and has a 3prime-terminal nucleotidyl-transferase activity

    M. De Falco

    págs. 5223-5230