Contribució dels bacteris marins heterotròfics cultivables en la diversitat microbiana i detoxificació del mercuri
- Autores: Isabel Sanz Sáez
- Directores de la Tesis: Silvia G. Acinas (dir. tes.), M. Olga Sánchez Martínez (codir. tes.)
- Lectura: En la Universitat Autònoma de Barcelona ( España ) en 2021
- Idioma: catalán
- Tribunal Calificador de la Tesis: Ramon Massana Molera (presid.), Isabel Ferrera Ceada (secret.), Linda Amaral Zettler (voc.)
- Programa de doctorado: Programa de Doctorado en Microbiología por la Universidad Autónoma de Barcelona
- Materias:
- Enlaces
- Tesis en acceso abierto en: TDX
- Resumen
The world’s oceans sustain the life for an estimated total of 10^29 microbial cells. Marine bacteria are responsible for most part of the ocean respiration and are key in most biogeochemical cycles of the Earth. Accordingly, the study of the bacterial diversity present in different marine ecosystems is essential, and having access to their genomes through isolation or genomic centric studies is important to decipher their metabolic potential.
Isolation of marine microorganisms is fundamental to gather information about their physiology, ecology and genomic content. To date, most of the bacterial isolation efforts have focused on the photic ocean leaving the deep ocean less explored. In this thesis, standard plating techniques allowed to create a marine culture collection of heterotrophic bacteria (MARINHET). More than 2000 isolates were retrieved from samples collected from a variety of oceanographic regions, from different depths including surface, mesopelagic and bathypelagic waters, and also covering different seasons and years. Chapter 1 describes the taxonomy, the phylogenetic diversity and the biogeography of culturable heterotrophic marine bacteria, and reveals that an important percentage of the strains (37%) are 100% identical in their partial 16S rRNA gene between photic and aphotic layers. In addition, we identified Alteromonas and Erythrobacter genera as the most frequently retrieved heterotrophic bacteria from the ocean in standard marine agar medium.
It is a long-standing observation that traditional culture techniques only retrieve a small fraction of the microbial diversity found in natural environments including marine ecosystems, what is known as “the great plate count anomaly”. In addition, most of the retrieved isolates belong to the so-called rare biosphere. However, we do not know if these patterns, usually described for bacteria living in the photic ocean, also apply for the deep ocean bacteria. In Chapter 2 of this thesis, I combined results from culture-dependent and -independent techniques by comparing the 16S rRNA partial sequences of the MARINHET isolates with 16S rRNA amplicon Illumina TAGs (16S iTAGs) and metagenomic TAGs (miTAGs) from surface, mesopelagic and bathypelagic samples globally distributed. A high proportion of bacteria inhabiting the deep ocean could be retrieved by pure culture techniques and a significant fraction of the isolates preferred a lifestyle attached to particles. Additionally, I revised the axiom that “less than 1% of bacteria can be cultured”, finding variability between mesopelagic and bathypelagic samples, where up to 3% of the cells could be cultured.
Bacterial isolates also represent a valuable genetic reservoir for biotechnology applications, such as bioremediation strategies of marine polluted environments. Mercury is one of the most toxic heavy metals in the planet and its most dangerous form, methylmercury (MeHg), is being bioaccumulated in the marine food web. However, little is known about the tolerance capacity and phenotypic characterization of marine bacteria codifying the mercury resistance operon (mer operon). Chapter 3 describes the functional screening of merA and merB genes, which are key in the mercury detoxification process, in well know marine genera with described genetic potential for mercury detoxification, such as Alteromonas and Marinobacter. I reported that the merAB genes from these two genera are widely distributed in different oceanographic regions and depths. In addition, I selected a promising candidate, phylogenetically affiliated to Alteromonas mediterranea, for future bioremediation studies due to its high tolerance and degradation ability of different mercury forms.
